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In Vivo RNA: RNA Interactions Using the SCRAP Bioinformatics Pipeline

December 1st, 2023

A Computational Pipeline for Analyzing Chimeric Noncoding RNA-Target RNA Interactions in High-Throughput Sequencing Data (Video) | JoVE

A Computational Pipeline for Analyzing Chimeric Noncoding RNA-Target RNA Interactions in High-Throughput Sequencing Data (Video) | JoVE

01:38 min

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Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis (Video) | JoVE

Installing and Running SCRAP for Small Noncoding RNA-mRNA Interaction Analysis (Video) | JoVE

03:47 min

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Peak Calling and Annotation in SCRAP for Small Noncoding RNA: Target RNA Interaction Studies (Video) | JoVE

Peak Calling and Annotation in SCRAP for Small Noncoding RNA: Target RNA Interaction Studies (Video) | JoVE

02:13 min

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Sreenivas Eadara¹, Xinbei Li¹, Emily A. Eiss¹, Mollie K. Meffert^1,2

¹Department of Biological Chemistry, Johns Hopkins University School of Medicine, ²Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine

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כאן, אנו מציגים פרוטוקול המדגים התקנה ושימוש בצנרת ביואינפורמטיקה לניתוח נתוני ריצוף RNA כימריים המשמשים במחקר אינטראקציות in vivo RNA:RNA.

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